[ome-devel] bfconvert -range option does not seem to be working corretly

[David Gault (Staff)]

Hi Tjelvar,

Thank you for bringing this to our attention. I was able to test and reproduce similar behaviour to that which you reported. This does look like a bug when using the -range option with CZI files.

I have created a bug ticket for this issue and listed it to the Bio-Formats inbox for further investigation. I have added you to the cc list for the ticket so you will receive updates with any progress.
https://trac.openmicroscopy.org/ome/ticket/13324#ticket

With Thanks,
David Gault

On 22 Feb 2017, at 10:03, Tjelvar Olsson (JIC) <Tjelvar.Olsson at jic.ac.uk<mailto:Tjelvar.Olsson at jic.ac.uk>> wrote:

Dear OME team,

I think that the "bfconvert -range" option may not be working correctly.

Converting from a czi file with three channels to a ome.tif file it seems to only convert the data from channel 1.

Further specifying channel 0 explicitly using the -channel option results in no output being written at all,
whilst still returning status code 0 (i.e. reporting that all has gone to plan).

Below is a link to a gist to reproduce what I have described above.

https://gist.github.com/tjelvar-olsson/0efedb04b580e77cd966430fe50e499c

Kind regards,

Tjelvar
_______________________________________________
ome-devel mailing list
ome-devel at lists.openmicroscopy.org.uk<mailto:ome-devel at lists.openmicroscopy.org.uk>
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel


The University of Dundee is a registered Scottish Charity, No: SC015096
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-devel/attachments/20170223/3407cd33/attachment.html>