[ome-devel] Uploaded tables appear under attachments in OMERO.web

Alison Walter wackywalter017 at gmail.com
Wed Aug 2 14:56:45 BST 2017


Hi Will,

Thank you very much for the information! I was misunderstanding the
intention of the "Tables" tab. I was thinking that the "Tables" tab was for
tables directly attached to the image, not tables attached to the parent
object. Currently, imagej-omero supports attaching tables to an associated
image so listing them under "Attachments" is fine. I just saw the "Tables"
tab and got confused, but it makes sense now.

Thanks again!

Alison

On Wed, Aug 2, 2017 at 3:29 AM, William Moore (Staff) <W.Moore at dundee.ac.uk>
wrote:

> Hi Alison,
>
>  The “Tables” tab for an Image shows data for the Image that comes from a
> Table attached to a parent object.
>
> Are your images in a Plate (Well) or in a Dataset?
> Currently the webclient only displays data for images in a Plate (not for
> Images in a Dataset).
>
> I’ve created a ticket to address that:
> https://trello.com/c/aWpuIUxX/96-support-for-omerotables-for-dataset
>
> In the meantime, you could use a “Map annotation” to store a list of
> key-value pairs on each image.
> This will display nicely in the webclient.
>
> If your data is in a Plate, the table attached to the Plate needs to use a
> WellColumn with Well IDs to
> define which Well / Image each row is referring to.
>
> Let us know if we can help you with a code sample of this or for creating
> Map Annotations?
>
>  Regards,
>
>    Will.
>
>
>
> On 1 Aug 2017, at 20:34, Alison Walter <wackywalter017 at gmail.com> wrote:
>
> Hello,
>
> I've been working to update ImageJ - OMERO to use the TablesFacility, and
> I noticed in OMERO.web when I upload a table it is listed under the
> "Attachments" section instead of "Tables" (see screenshot). I am using
> TablesFacility.addTable(...) to upload tables to the server.
>
> Is there a way to get my table files under the "Tables" section instead of
> the "Attachments" section? If so, how?
>
> Thank you very much,
>
> Alison Walter
> <omero-web-table-tab.png>_______________________________________________
> ome-devel mailing list
> ome-devel at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>
>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
>
> _______________________________________________
> ome-devel mailing list
> ome-devel at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-devel/attachments/20170802/c0ebe809/attachment.html>


More information about the ome-devel mailing list