[ome-devel] BioFormats and BigTiff / Fiji

[Niko Ehrenfeuchter]

Dear all,

wih an up to date Fiji I was trying to save a ~8.4 GB dataset using the 
BioFormats exporter, but it stopped immediately complaining the file 
being to large (error log is attached).

I remember saving OME-TIFFs with more than 4 GB without problems, did I 
do something wrong?

Thanks a lot
~Niko
-- 
Niko Ehrenfeuchter | Image Analysis Specialist | Biozentrum, University 
of Basel | Klingelbergstr. 50/70 | CH-4056 Basel
Phone: +41 (61) 26 72673 | nikolaus.ehrenfeuchter at unibas.ch | 
www.biozentrum.unibas.ch | www.microscopynetwork.unibas.ch
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loci.formats.FormatException: File is too large; call setBigTiff(true)
	at loci.formats.out.TiffWriter.prepareToWriteImage(TiffWriter.java:302)
	at loci.formats.out.TiffWriter.saveBytes(TiffWriter.java:180)
	at loci.formats.out.OMETiffWriter.saveBytes(OMETiffWriter.java:197)
	at loci.formats.out.OMETiffWriter.saveBytes(OMETiffWriter.java:183)
	at loci.formats.FormatWriter.saveBytes(FormatWriter.java:126)
	at loci.plugins.out.Exporter.run(Exporter.java:629)
	at loci.plugins.LociExporter.run(LociExporter.java:77)
	at ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:262)
	at ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:111)
	at ij.IJ.runUserPlugIn(IJ.java:204)
	at ij.IJ.runPlugIn(IJ.java:166)
	at ij.Executer.runCommand(Executer.java:131)
	at ij.Executer.run(Executer.java:64)
	at ij.IJ.run(IJ.java:272)
	at ij.IJ.run(IJ.java:250)
	at ij.macro.Functions.doRun(Functions.java:593)
	at ij.macro.Functions.doFunction(Functions.java:89)
	at ij.macro.Interpreter.doStatement(Interpreter.java:227)
	at ij.macro.Interpreter.doStatements(Interpreter.java:215)
	at ij.macro.Interpreter.run(Interpreter.java:112)
	at ij.macro.Interpreter.run(Interpreter.java:82)
	at ij.macro.MacroRunner.run(MacroRunner.java:139)
	at java.lang.Thread.run(Thread.java:662)