[ome-devel] in place import failed

[Yanling Liu]

Hi, it's me, again, :-)

Trying to do in place import to inject existing images into OMERO but
failed.

Previously I created python script to invoke bin/omero to do import:

omeroBin = "/home/omero/omero/OMERO.server/bin/omero"
createImport = omeroBin + " import -d " + datasetId + " -u " + username + "
--sudo root -w " + rootPWD + " -s localhost '" + path + "'"
subprocess.call(createImport, shell=True)

Essentially what I am doing is to import existing images for other users
using the root account.

It works well till I try to use in place import. Based on omero
documentation (
https://www.openmicroscopy.org/site/support/omero5/sysadmins/in-place-import.html),
I modified my script to be like this:

createImport = omeroBin + " import -- --transfer=ln_s -d " + datasetId + "
-u " + username + " --sudo root -w " + rootPWD + " -s localhost '" + path +
"'"

The only difference is to add "-- --transfer=ln_s" in the command line
string.

However, I got something like this:

2014-10-01 12:59:46,180 177        [      main] INFO
 ome.formats.importer.ImportConfig - OMERO Version: 5.0.3-ice34-b41
2014-10-01 12:59:46,193 190        [      main] INFO
 ome.formats.importer.ImportConfig - Bioformats version: 5.0.3-ice34-b41
revision: 5f987c0 date: 5 August 2014
2014-10-01 12:59:46,198 195        [      main] INFO
formats.importer.cli.CommandLineImporter - Setting transfer to ln_s
importer-cli: unrecognized option '--sudo'


Any help?

Thanks,
Yanling
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