[ome-devel] ome-io POM / omero-client version / demo.openmicroscopy.org

Lee Kamentsky leek at broadinstitute.org
Thu Feb 20 14:39:26 GMT 2014


Hi all, hope this is the right list for this. I'm trying to connect to
demo.openmicroscopy.org with loci.ome.io.OmeroReader in the ome-io project.
The omero-client dependency is 4.3.1. Everything worked with the old demo
URL, but I'm now getting the following stack trace:

Ice.MarshalException
    reason = (null)
at IceInternal.BasicStream.typeToClass(BasicStream.java:2403)
at IceInternal.BasicStream.findClass(BasicStream.java:2320)
at IceInternal.BasicStream.loadObjectFactory(BasicStream.java:2187)
at IceInternal.BasicStream.readObject(BasicStream.java:1540)
at omero.model.IObject.__read(IObject.java:465)
at omero.model.Image.__read(Image.java:2455)
at IceInternal.BasicStream.readObject(BasicStream.java:1590)
at IceInternal.BasicStream.readPendingObjects(BasicStream.java:1739)
at omero.api._GatewayDelM.getImage(_GatewayDelM.java:606)
at omero.api.GatewayPrxHelper.getImage(GatewayPrxHelper.java:730)
at omero.api.GatewayPrxHelper.getImage(GatewayPrxHelper.java:702)
at loci.ome.io.OmeroReader.initFile(OmeroReader.java:314)
at loci.formats.FormatReader.setId(FormatReader.java:1333)

I'm thinking that there's a version mismatch between the server and one of
the .jar files. I'm using blitz.jar, common.jar, model-psql.jar and ice.jar
from OMERO.clients-4.4.6 and ome-io's POM is an effective dependency of
CellProfiler.

Hoping to pick some combination of jars that are compatible with as many
servers as possible, but it's always possible for me to load different jars
in CellProfiler based on a configuration setting or command-line switch.

--Lee
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