[ome-devel] DeltaVision import
Melissa Linkert
melissa at glencoesoftware.com
Tue Jan 22 20:39:17 GMT 2013
Hi Chris,
> I have some files from a DeltaVision OMX that are not importing with the
> command line importer (on the server) or with a python that essentially
> calls the command line importer. Insight and omero.Importer work file
> importing the files. Everything is omero 4.4.5.
>
> I saw an issue like this on the ome github, but it looked like it didn't
> make it into the 4.4.5 release. Any ideas?
This was fixed shortly after the 4.4.5 release; the upcoming 4.4.6
release should include the fix. The problem has to do with the optional
.log file associated with the .dv file, so for now you should be able to work
around the problem by moving or renaming the .log file(s).
Regards,
-Melissa
On Tue, Jan 22, 2013 at 02:29:26PM -0600, Wood, Christopher wrote:
> Hello,
>
> I have some files from a DeltaVision OMX that are not importing with the
> command line importer (on the server) or with a python that essentially
> calls the command line importer. Insight and omero.Importer work file
> importing the files. Everything is omero 4.4.5.
>
> I saw an issue like this on the ome github, but it looked like it didn't
> make it into the 4.4.5 release. Any ideas?
>
> Thanks,
>
> Chris,
>
>
> Here is the error log:
>
> 2013-01-22 14:27:59,544 6229 [ main] DEBUG
> ormats.importer.cli.LoggingImportMonitor - INTERNAL_EXCEPTION:
> /OMERO/AutoImport/Microscopy/cjw/OMX2/Jay/1-8-12/diploid_spb_mps3gfp_017.dv
> java.lang.RuntimeException: omero.ApiUsageException
> serverStackTrace = "ome.conditions.ApiUsageException: Missing
> reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference.
> at
> ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
> )
> at
> ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
> at
> sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.security.basic.EventHandler.invoke(EventHandler.java:154)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
> erceptor.java:111)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
> ransactionInterceptor.java:108)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
> r.java:241)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy65.doWork(Unknown Source)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:406)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:350)
> at
> ome.services.throttling.Adapter.run(Adapter.java:51)
> at
> ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
> ottlingStrategy.java:89)
> at
> ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
> java:164)
> at
> ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
> I.java:232)
> at
> sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> omero.cmd.CallContext.invoke(CallContext.java:59)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy100.updateReferences_async(Unknown
> Source)
> at
> omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
> 15)
> at
> omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
> 9)
> at
> omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
> at IceInternal.Incoming.invoke(Incoming.java:159)
> at
> Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
> at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
> at Ice.ConnectionI.message(ConnectionI.java:1163)
> at IceInternal.ThreadPool.run(ThreadPool.java:302)
> at
> IceInternal.ThreadPool.access$300(ThreadPool.java:12)
> at
> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
> at java.lang.Thread.run(Thread.java:662)
> "
> serverExceptionClass = "ome.conditions.ApiUsageException"
> message = "Missing reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference."
> at
> ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
> :2134)
> at
> ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:359)
> at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:541)
> at
> ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:289)
> at
> ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java
> :143)
> at
> ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:
> 462)
> Caused by: omero.ApiUsageException
> serverStackTrace = "ome.conditions.ApiUsageException: Missing
> reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference.
> at
> ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
> )
> at
> ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
> at
> sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.security.basic.EventHandler.invoke(EventHandler.java:154)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
> erceptor.java:111)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
> ransactionInterceptor.java:108)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
> r.java:241)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy65.doWork(Unknown Source)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:406)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:350)
> at
> ome.services.throttling.Adapter.run(Adapter.java:51)
> at
> ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
> ottlingStrategy.java:89)
> at
> ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
> java:164)
> at
> ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
> I.java:232)
> at
> sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> omero.cmd.CallContext.invoke(CallContext.java:59)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy100.updateReferences_async(Unknown
> Source)
> at
> omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
> 15)
> at
> omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
> 9)
> at
> omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
> at IceInternal.Incoming.invoke(Incoming.java:159)
> at
> Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
> at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
> at Ice.ConnectionI.message(ConnectionI.java:1163)
> at IceInternal.ThreadPool.run(ThreadPool.java:302)
> at
> IceInternal.ThreadPool.access$300(ThreadPool.java:12)
> at
> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
> at java.lang.Thread.run(Thread.java:662)
> "
> serverExceptionClass = "ome.conditions.ApiUsageException"
> message = "Missing reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference."
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcce
> ssorImpl.java:39)
> at
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstru
> ctorAccessorImpl.java:27)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
> at java.lang.Class.newInstance0(Class.java:355)
> at java.lang.Class.newInstance(Class.java:308)
> at
> IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStr
> eam.java:2142)
> at IceInternal.BasicStream.throwException(BasicStream.java:1564)
> at IceInternal.Outgoing.throwUserException(Outgoing.java:443)
> at
> omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:324)
> at
> omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
> va:984)
> at
> omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
> va:957)
> at
> ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
> :2118)
> ... 5 more
>
>
> 2013-01-22 14:27:59,546 6231 [ main] ERROR
> ome.formats.importer.cli.ErrorHandler - INTERNAL_EXCEPTION:
> /OMERO/AutoImport/Microscopy/cjw/OMX2/Jay/1-8-12/diploid_spb_mps3gfp_017.dv
> java.lang.RuntimeException: omero.ApiUsageException
> serverStackTrace = "ome.conditions.ApiUsageException: Missing
> reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference.
> at
> ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
> )
> at
> ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
> at
> sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.security.basic.EventHandler.invoke(EventHandler.java:154)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
> erceptor.java:111)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
> ransactionInterceptor.java:108)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
> r.java:241)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy65.doWork(Unknown Source)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:406)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:350)
> at
> ome.services.throttling.Adapter.run(Adapter.java:51)
> at
> ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
> ottlingStrategy.java:89)
> at
> ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
> java:164)
> at
> ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
> I.java:232)
> at
> sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> omero.cmd.CallContext.invoke(CallContext.java:59)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy100.updateReferences_async(Unknown
> Source)
> at
> omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
> 15)
> at
> omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
> 9)
> at
> omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
> at IceInternal.Incoming.invoke(Incoming.java:159)
> at
> Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
> at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
> at Ice.ConnectionI.message(ConnectionI.java:1163)
> at IceInternal.ThreadPool.run(ThreadPool.java:302)
> at
> IceInternal.ThreadPool.access$300(ThreadPool.java:12)
> at
> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
> at java.lang.Thread.run(Thread.java:662)
> "
> serverExceptionClass = "ome.conditions.ApiUsageException"
> message = "Missing reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference."
> at
> ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
> :2134)
> at
> ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:359)
> at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:541)
> at
> ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:289)
> at
> ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java
> :143)
> at
> ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:
> 462)
> Caused by: omero.ApiUsageException
> serverStackTrace = "ome.conditions.ApiUsageException: Missing
> reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference.
> at
> ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
> )
> at
> ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
> at
> sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.security.basic.EventHandler.invoke(EventHandler.java:154)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
> erceptor.java:111)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
> ransactionInterceptor.java:108)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
> r.java:241)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy65.doWork(Unknown Source)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:406)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:350)
> at
> ome.services.throttling.Adapter.run(Adapter.java:51)
> at
> ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
> ottlingStrategy.java:89)
> at
> ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
> java:164)
> at
> ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
> I.java:232)
> at
> sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> omero.cmd.CallContext.invoke(CallContext.java:59)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy100.updateReferences_async(Unknown
> Source)
> at
> omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
> 15)
> at
> omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
> 9)
> at
> omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
> at IceInternal.Incoming.invoke(Incoming.java:159)
> at
> Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
> at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
> at Ice.ConnectionI.message(ConnectionI.java:1163)
> at IceInternal.ThreadPool.run(ThreadPool.java:302)
> at
> IceInternal.ThreadPool.access$300(ThreadPool.java:12)
> at
> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
> at java.lang.Thread.run(Thread.java:662)
> "
> serverExceptionClass = "ome.conditions.ApiUsageException"
> message = "Missing reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference."
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcce
> ssorImpl.java:39)
> at
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstru
> ctorAccessorImpl.java:27)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
> at java.lang.Class.newInstance0(Class.java:355)
> at java.lang.Class.newInstance(Class.java:308)
> at
> IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStr
> eam.java:2142)
> at IceInternal.BasicStream.throwException(BasicStream.java:1564)
> at IceInternal.Outgoing.throwUserException(Outgoing.java:443)
> at
> omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:324)
> at
> omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
> va:984)
> at
> omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
> va:957)
> at
> ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
> :2118)
> ... 5 more
>
>
> 2013-01-22 14:27:59,548 6233 [ main] DEBUG
> ome.formats.OMEROMetadataStoreClient - Creating root!
>
> 2013-01-22 14:27:59,610 6295 [ main] DEBUG
> ormats.importer.cli.LoggingImportMonitor - INTERNAL_EXCEPTION:
> /OMERO/AutoImport/Microscopy/cjw/OMX2/Jay/1-8-12/diploid_spb_mps3gfp_017.dv
> java.lang.RuntimeException: java.lang.RuntimeException:
> omero.ApiUsageException
> serverStackTrace = "ome.conditions.ApiUsageException: Missing
> reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference.
> at
> ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
> )
> at
> ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
> at
> sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.security.basic.EventHandler.invoke(EventHandler.java:154)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
> erceptor.java:111)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
> ransactionInterceptor.java:108)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
> r.java:241)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy65.doWork(Unknown Source)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:406)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:350)
> at
> ome.services.throttling.Adapter.run(Adapter.java:51)
> at
> ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
> ottlingStrategy.java:89)
> at
> ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
> java:164)
> at
> ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
> I.java:232)
> at
> sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> omero.cmd.CallContext.invoke(CallContext.java:59)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy100.updateReferences_async(Unknown
> Source)
> at
> omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
> 15)
> at
> omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
> 9)
> at
> omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
> at IceInternal.Incoming.invoke(Incoming.java:159)
> at
> Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
> at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
> at Ice.ConnectionI.message(ConnectionI.java:1163)
> at IceInternal.ThreadPool.run(ThreadPool.java:302)
> at
> IceInternal.ThreadPool.access$300(ThreadPool.java:12)
> at
> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
> at java.lang.Thread.run(Thread.java:662)
> "
> serverExceptionClass = "ome.conditions.ApiUsageException"
> message = "Missing reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference."
> at
> ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:292)
> at
> ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java
> :143)
> at
> ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:
> 462)
> Caused by: java.lang.RuntimeException: omero.ApiUsageException
> serverStackTrace = "ome.conditions.ApiUsageException: Missing
> reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference.
> at
> ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
> )
> at
> ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
> at
> sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.security.basic.EventHandler.invoke(EventHandler.java:154)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
> erceptor.java:111)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
> ransactionInterceptor.java:108)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
> r.java:241)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy65.doWork(Unknown Source)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:406)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:350)
> at
> ome.services.throttling.Adapter.run(Adapter.java:51)
> at
> ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
> ottlingStrategy.java:89)
> at
> ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
> java:164)
> at
> ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
> I.java:232)
> at
> sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> omero.cmd.CallContext.invoke(CallContext.java:59)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy100.updateReferences_async(Unknown
> Source)
> at
> omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
> 15)
> at
> omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
> 9)
> at
> omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
> at IceInternal.Incoming.invoke(Incoming.java:159)
> at
> Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
> at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
> at Ice.ConnectionI.message(ConnectionI.java:1163)
> at IceInternal.ThreadPool.run(ThreadPool.java:302)
> at
> IceInternal.ThreadPool.access$300(ThreadPool.java:12)
> at
> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
> at java.lang.Thread.run(Thread.java:662)
> "
> serverExceptionClass = "ome.conditions.ApiUsageException"
> message = "Missing reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference."
> at
> ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
> :2134)
> at
> ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:359)
> at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:541)
> at
> ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:289)
> ... 2 more
> Caused by: omero.ApiUsageException
> serverStackTrace = "ome.conditions.ApiUsageException: Missing
> reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference.
> at
> ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
> )
> at
> ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
> at
> sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.security.basic.EventHandler.invoke(EventHandler.java:154)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
> erceptor.java:111)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
> ransactionInterceptor.java:108)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
> r.java:241)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy65.doWork(Unknown Source)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:406)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:350)
> at
> ome.services.throttling.Adapter.run(Adapter.java:51)
> at
> ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
> ottlingStrategy.java:89)
> at
> ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
> java:164)
> at
> ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
> I.java:232)
> at
> sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> omero.cmd.CallContext.invoke(CallContext.java:59)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy100.updateReferences_async(Unknown
> Source)
> at
> omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
> 15)
> at
> omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
> 9)
> at
> omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
> at IceInternal.Incoming.invoke(Incoming.java:159)
> at
> Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
> at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
> at Ice.ConnectionI.message(ConnectionI.java:1163)
> at IceInternal.ThreadPool.run(ThreadPool.java:302)
> at
> IceInternal.ThreadPool.access$300(ThreadPool.java:12)
> at
> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
> at java.lang.Thread.run(Thread.java:662)
> "
> serverExceptionClass = "ome.conditions.ApiUsageException"
> message = "Missing reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference."
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcce
> ssorImpl.java:39)
> at
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstru
> ctorAccessorImpl.java:27)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
> at java.lang.Class.newInstance0(Class.java:355)
> at java.lang.Class.newInstance(Class.java:308)
> at
> IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStr
> eam.java:2142)
> at IceInternal.BasicStream.throwException(BasicStream.java:1564)
> at IceInternal.Outgoing.throwUserException(Outgoing.java:443)
> at
> omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:324)
> at
> omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
> va:984)
> at
> omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
> va:957)
> at
> ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
> :2118)
> ... 5 more
>
>
> 2013-01-22 14:27:59,612 6297 [ main] ERROR
> ome.formats.importer.cli.ErrorHandler - INTERNAL_EXCEPTION:
> /OMERO/AutoImport/Microscopy/cjw/OMX2/Jay/1-8-12/diploid_spb_mps3gfp_017.dv
> java.lang.RuntimeException: java.lang.RuntimeException:
> omero.ApiUsageException
> serverStackTrace = "ome.conditions.ApiUsageException: Missing
> reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference.
> at
> ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
> )
> at
> ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
> at
> sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.security.basic.EventHandler.invoke(EventHandler.java:154)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
> erceptor.java:111)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
> ransactionInterceptor.java:108)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
> r.java:241)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy65.doWork(Unknown Source)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:406)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:350)
> at
> ome.services.throttling.Adapter.run(Adapter.java:51)
> at
> ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
> ottlingStrategy.java:89)
> at
> ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
> java:164)
> at
> ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
> I.java:232)
> at
> sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> omero.cmd.CallContext.invoke(CallContext.java:59)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy100.updateReferences_async(Unknown
> Source)
> at
> omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
> 15)
> at
> omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
> 9)
> at
> omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
> at IceInternal.Incoming.invoke(Incoming.java:159)
> at
> Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
> at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
> at Ice.ConnectionI.message(ConnectionI.java:1163)
> at IceInternal.ThreadPool.run(ThreadPool.java:302)
> at
> IceInternal.ThreadPool.access$300(ThreadPool.java:12)
> at
> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
> at java.lang.Thread.run(Thread.java:662)
> "
> serverExceptionClass = "ome.conditions.ApiUsageException"
> message = "Missing reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference."
> at
> ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:292)
> at
> ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java
> :143)
> at
> ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:
> 462)
> Caused by: java.lang.RuntimeException: omero.ApiUsageException
> serverStackTrace = "ome.conditions.ApiUsageException: Missing
> reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference.
> at
> ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
> )
> at
> ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
> at
> sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.security.basic.EventHandler.invoke(EventHandler.java:154)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
> erceptor.java:111)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
> ransactionInterceptor.java:108)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
> r.java:241)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy65.doWork(Unknown Source)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:406)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:350)
> at
> ome.services.throttling.Adapter.run(Adapter.java:51)
> at
> ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
> ottlingStrategy.java:89)
> at
> ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
> java:164)
> at
> ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
> I.java:232)
> at
> sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> omero.cmd.CallContext.invoke(CallContext.java:59)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy100.updateReferences_async(Unknown
> Source)
> at
> omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
> 15)
> at
> omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
> 9)
> at
> omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
> at IceInternal.Incoming.invoke(Incoming.java:159)
> at
> Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
> at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
> at Ice.ConnectionI.message(ConnectionI.java:1163)
> at IceInternal.ThreadPool.run(ThreadPool.java:302)
> at
> IceInternal.ThreadPool.access$300(ThreadPool.java:12)
> at
> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
> at java.lang.Thread.run(Thread.java:662)
> "
> serverExceptionClass = "ome.conditions.ApiUsageException"
> message = "Missing reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference."
> at
> ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
> :2134)
> at
> ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:359)
> at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:541)
> at
> ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:289)
> ... 2 more
> Caused by: omero.ApiUsageException
> serverStackTrace = "ome.conditions.ApiUsageException: Missing
> reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference.
> at
> ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
> )
> at
> ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
> at
> sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.security.basic.EventHandler.invoke(EventHandler.java:154)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
> erceptor.java:111)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
> ransactionInterceptor.java:108)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
> r.java:241)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy65.doWork(Unknown Source)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:406)
> at
> ome.services.util.Executor$Impl.execute(Executor.java:350)
> at
> ome.services.throttling.Adapter.run(Adapter.java:51)
> at
> ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
> ottlingStrategy.java:89)
> at
> ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
> java:164)
> at
> ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
> I.java:232)
> at
> sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
> l.java:25)
> at
> java.lang.reflect.Method.invoke(Method.java:597)
> at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
> Utils.java:307)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
> t(ReflectiveMethodInvocation.java:183)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:150)
> at
> omero.cmd.CallContext.invoke(CallContext.java:59)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
> tiveMethodInvocation.java:172)
> at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
> oxy.java:202)
> at $Proxy100.updateReferences_async(Unknown
> Source)
> at
> omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
> 15)
> at
> omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
> 9)
> at
> omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
> at IceInternal.Incoming.invoke(Incoming.java:159)
> at
> Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
> at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
> at Ice.ConnectionI.message(ConnectionI.java:1163)
> at IceInternal.ThreadPool.run(ThreadPool.java:302)
> at
> IceInternal.ThreadPool.access$300(ThreadPool.java:12)
> at
> IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
> at java.lang.Thread.run(Thread.java:662)
> "
> serverExceptionClass = "ome.conditions.ApiUsageException"
> message = "Missing reference handler for Objective:10612(null) -->
> omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
> h_984040926) reference."
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcce
> ssorImpl.java:39)
> at
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstru
> ctorAccessorImpl.java:27)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
> at java.lang.Class.newInstance0(Class.java:355)
> at java.lang.Class.newInstance(Class.java:308)
> at
> IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStr
> eam.java:2142)
> at IceInternal.BasicStream.throwException(BasicStream.java:1564)
> at IceInternal.Outgoing.throwUserException(Outgoing.java:443)
> at
> omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:324)
> at
> omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
> va:984)
> at
> omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
> va:957)
> at
> ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
> :2118)
> ... 5 more
>
>
>
>
>
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