[ome-devel] ome.tif creation and omero-insight

[Pearu Peterson]

Hi Jmarie,

On Tue, Nov 23, 2010 at 10:42 PM, Jean-Marie Burel <j.burel at dundee.ac.uk> wrote:

> Just a though, for large textual annotations, you should probably use
> FileAnnotation instead of comment annotation

In fact, this was my first approach but omere-importer failed on
importing ome.tif files with FileAnnotation-s.
The Import Errors page shows java.lang.NullPointerException message.
The Debug Text page shows:

java.lang.NullPointerException
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:582)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:433)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:376)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:206)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:662)

Please find the corresponding ome.tif file (1.4MB) in
  http://cens.ioc.ee/~pearu/omero/data_experiment_energy_confocal_diffusion_10.08.13-dextran-mouse_cell2-bad_channel-1_Confocal.ome.tif
Without the FileAnnotation the file imports succesfully.
Any idea what could be wrong?

Pearu