[ome-devel] ZVI Import not working

Simon Kainz simon.kainz at tugraz.at
Mon May 26 11:30:49 BST 2008


Hello!

I'm using Omero Server version 3.0-Beta2.3 (Rev.1701) and Omero.importer
3.0-Beta2.3.1.

I tried serveral images and get the following error:

java.lang.IllegalStateException: LegacyZVIReader.openBytes: Current file
should not be null; call setId(String) first
        at loci.formats.FormatTools.assertId(FormatTools.java:474)
        at
loci.formats.in.LegacyZVIReader.openBytes(LegacyZVIReader.java:107)
        at loci.formats.in.ZeissZVIReader.openBytes(ZeissZVIReader.java:148)
        at loci.formats.in.ZeissZVIReader.openBytes(ZeissZVIReader.java:277)
        at loci.formats.ImageReader.openBytes(ImageReader.java:360)
        at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:168)
        at
loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:154)
        at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:202)
        at
loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:232)
        at
loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:215)
        at
ome.formats.importer.OMEROWrapper.openPlane2D(OMEROWrapper.java:82)
        at
ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:421)
        at
ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:368)
        at
ome.formats.importer.ImportHandler.importImages(ImportHandler.java:171)
        at
ome.formats.importer.ImportHandler.access$0(ImportHandler.java:104)
        at ome.formats.importer.ImportHandler$1.run(ImportHandler.java:85)


The Images are 512x512 but the importer log tells them to be 1024x1024...

Do I need a newer version of the importer, the server or both ?

Yours, Simon
-- 
Simon Kainz, BSc
Graz, University of Technology
Department Computing
Phone: ++43 (0) 316 / 873 6885


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