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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi Tom,
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<div>Hope all's well</div>
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<div>Yes there seems to be a problem with .msr files at the moment - I think there has been a change in the format. </div>
<div>We are working on fixing this with the bioformats guys.</div>
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<div>You can use the "Load Time Point Calibration File" option to relabel the time axis. It expects a csv file with two columns with headers (header names are not important). </div>
<div>The first column should be the time points to be relabelled (i.e. the incorrect time points) and the second column should be matching correct time point. </div>
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<div>Hope that helps in the short term - we should have the msr loading fixed soon</div>
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<div>Cheers</div>
<div>Sean</div>
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<p style="color:rgb(51,51,51); font-family:Arial,sans-serif; line-height:18.6560001373291px; background-color:rgb(255,255,255)">
<font size="2"><strong>Dr. Sean Warren </strong>| Research Officer<br>
Invasion and Metastasis<br>
Cancer Division<br>
<strong>Garvan Institute of Medical Research </strong><br>
The Kinghorn Cancer Centre,<strong> </strong>370 Victoria Street, Darlinghurst, NSW 2010</font></p>
<p style="color:rgb(51,51,51); font-family:Arial,sans-serif; line-height:18.6560001373291px; background-color:rgb(255,255,255)">
<font size="2"><strong>T</strong>: + 61 (0)2 9355 5852 I<strong> E</strong>: <font color="blue">s.warren@garvan.org.au</font> </font></p>
<p style="color:rgb(51,51,51); font-family:Arial,sans-serif; line-height:18.6560001373291px; background-color:rgb(255,255,255)">
<span style="color:rgb(0,0,255); font-size:small">http://www.garvan.org.au/research/cancer/invasion-and-metastasis</span></p>
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<div id="divRpF63201" style="direction: ltr;"><font face="Tahoma" size="2" color="#000000"><b>From:</b> FLIMfit-users [flimfit-users-bounces@lists.openmicroscopy.org.uk] on behalf of Tom Robinson [Tom.Robinson@mpikg.mpg.de]<br>
<b>Sent:</b> Wednesday, 23 March 2016 03:07<br>
<b>To:</b> flimfit-users@lists.openmicroscopy.org.uk<br>
<b>Subject:</b> [FLIMfit-users] Issue with time-base<br>
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<p class="MsoNormal"><span lang="EN-GB">Dear Sean (or other users),</span></p>
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<p class="MsoNormal"><span lang="EN-GB">I am having issues opening .msr files (generated using Imspector software on Abberior Instruments microscope with a B&H card) in FLIMfit. It can open them, then it asks which data set to select, and then it hangs on some
process. I can, however, open the .msr files in Fiji (bio formats) and save them as ome-tiffs. FLIMfit is happy to open this format but all the time-base data gets lost.
</span></p>
<p class="MsoNormal"><span lang="EN-GB"> </span></p>
<p class="MsoNormal"><span lang="EN-GB">Therefore 1) Is there a way to change the time-based within FLIMfit? Maybe using “load time point calibration file” (I couldn’t find info on this in the documentation. Or 2) be able to open the .msr files directly?</span></p>
<p class="MsoNormal"><span lang="EN-GB"> </span></p>
<p class="MsoNormal"><span lang="EN-GB">Thanks in advance,</span></p>
<p class="MsoNormal"><span lang="EN-GB"> </span></p>
<p class="MsoNormal"><span lang="EN-GB">Tom</span></p>
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